PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g087000.3
Common NameMTR_8g087000
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 184aa    MW: 20733.6 Da    PI: 4.6303
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g087000.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY491.2e-1535732259
                     EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                     r+YYrC+s  gCp++k+vers+ dp++++itY+++Hnh 
  Medtr8g087000.3 35 RAYYRCSSCkGCPARKQVERSRVDPTMLIITYSSDHNHA 73
                     9*****9988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007745.3E-83374IPR003657WRKY domain
SuperFamilySSF1182901.05E-123375IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-163475IPR003657WRKY domain
PfamPF031062.9E-123472IPR003657WRKY domain
PROSITE profilePS5081118.2113575IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MTSIFGNFKV CVKVEETESR FVLSVCELGH IYMYRAYYRC SSCKGCPARK QVERSRVDPT  60
MLIITYSSDH NHAWPVSKTT TRLSLKKTEP DPVEPDEKFA GHLVLDDELG WLGEIDTNSS  120
AILESPIMAE FDNDMASVFL PMEEEDELLF ADLGELPECS TVFRHGLLDA RRRLTAPWCG  180
TTT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.184750.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g087000.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1606280.0AC160628.37 Medicago truncatula clone mth2-187a11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629812.21e-108probable WRKY transcription factor 65 isoform X1
SwissprotQ9LP564e-39WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A072TTC31e-134A0A072TTC3_MEDTR; WRKY family transcription factor
STRINGAET042881e-107(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.16e-40WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]