PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g089130.1
Common NameMTR_8g089130
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 159aa    MW: 17599.7 Da    PI: 4.6585
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g089130.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.66.1e-12732934
             GATA  9 TplWRrgpdgnktLCnaCGlyyrkkg 34
                     Tp WR+gp+ ++ LCnaCG +yr  g
  Medtr8g089130.1  7 TPVWRQGPEEKPVLCNACGTRYRNGG 32
                     9*******99999**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0067244IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.8E-7648No hitNo description
Gene3DG3DSA:3.30.50.107.9E-9633IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.34E-8732No hitNo description
PfamPF003208.0E-10732IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDSSPATPVW RQGPEEKPVL CNACGTRYRN GGNLEEHSLK RCFPKELVVR CSGNIRSNSL  60
KESSSTIDVS DSDNDEEDLD SFKSVVVSSK RRCLRIINQK MTPMEKFQQE LLDELKNHGI  120
PDESSPEEVL LFENVNNFIP SNEIGLGAVL LKSDGSSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g089130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1618631e-140AC161863.21 Medicago truncatula clone mth2-175f4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027191885.11e-50GATA transcription factor 26-like
TrEMBLG7L9J61e-111G7L9J6_MEDTR; GATA zinc finger protein
STRINGAET044701e-100(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127471024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.14e-10GATA transcription factor 27
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]