PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr8g091650.5

Common Name

MTR_8g091650

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bZIP

Protein Properties

Length: 286aa MW: 32708.7 Da PI: 7.5963

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr8g091650.5	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.4e-11	3	40	6	42
HHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLee.kvkeLeaeN 42 +rr+++NReAAr+sR++Kka i++Le + k L+ e Medtr8g091650.5 3 MQRRLAQNREAARKSRLKKKAHIQQLEScRLKLLQVEQ 40 69************************975666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.4E-4	1	79	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-7	2	39	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.5E-7	3	42	No hit	No description
SuperFamily	SSF57959	1.13E-6	3	30	No hit	No description
PROSITE pattern	PS00036	0	5	20	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-25	87	162	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MQMQRRLAQN REAARKSRLK KKAHIQQLES CRLKLLQVEQ ELDHTKQGLY IGGGLDSNNL 60 GFAGSVNSEI ATFKMEYEHW VEELNRQMLE LKGALSAHSS DIRIGELVNG LMNHYFKLFC 120 MKSDAAKVDV FYVITGMWKT TAEGFFLWIG GFRPSELLKV LVPLIEPLTE EQRFDAYNLE 180 KSCRQAEDAL SQGMEKLQGM LVDTVAAGQL VEGTYIPQMD IAIERLEALA SFVNQADHLR 240 QETLQQMSRI LTVRQTARWL LALGEYFQRL RDLSKLWTNR PREPA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.14223	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269\|PubMed:8628224}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269\|PubMed:8628224}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr8g091650.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT140750	0.0	BT140750.1 Medicago truncatula clone JCVI-FLMt-5N7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013446843.1	0.0	transcription factor TGA1 isoform X4
Swissprot	Q39162	1e-136	TGA4_ARATH; Transcription factor TGA4
Swissprot	Q39237	1e-136	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A072U4Y3	0.0	A0A072U4Y3_MEDTR; BZIP family transcription factor
STRING	AET02307	0.0	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.6	1e-139	bZIP family protein

Link Out ? help Back to Top
Phytozome	Medtr8g091650.5
Entrez Gene	11432176

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]