PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g092010.1
Common NameMTR_8g092010
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 185aa    MW: 21380.7 Da    PI: 7.28
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g092010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.28.3e-29107165159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +dDgy+WrKYG+K+vk+s++ r+YY+C+s gC+vkk+ver+++d ++v++ Yeg Hnhe
  Medtr8g092010.1 107 MDDGYKWRKYGKKSVKNSPNLRNYYKCSSVGCNVKKRVERDRDDSSYVITSYEGVHNHE 165
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-3194167IPR003657WRKY domain
SuperFamilySSF1182907.85E-2799167IPR003657WRKY domain
PROSITE profilePS5081130.113102167IPR003657WRKY domain
SMARTSM007741.8E-32107166IPR003657WRKY domain
PfamPF031062.9E-22108165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDYYFVNPHA TPNFAHSTHM MIPNPSSEFI LSDYLMLDDI CIDHHDQESR SQSTESLEKV  60
TFNDVNQEFN DATSKNNNIK YKNGIKRNKG EAGQKIAFRT RSELEIMDDG YKWRKYGKKS  120
VKNSPNLRNY YKCSSVGCNV KKRVERDRDD SSYVITSYEG VHNHEIPFTS HCSQISFVHS  180
DAYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2497167777Probable WRKY transcription factor 4
2lex_A2e-2497167777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g092010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1558981e-129AC155898.15 Medicago truncatula clone mth2-109f1, complete sequence.
GenBankAC1587371e-129AC158737.14 Medicago truncatula clone mth2-154f20, complete sequence.
GenBankAC2024851e-129AC202485.8 Medicago truncatula clone mth2-176b2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630118.11e-137probable WRKY transcription factor 51
TrEMBLG7LBB41e-136G7LBB4_MEDTR; Putative transcription factor WRKY family
STRINGAET045941e-137(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.14e-40WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]