PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g092140.1
Common NameMTR_8g092140
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 235aa    MW: 26649 Da    PI: 8.9522
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g092140.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.81.9e-32159217159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vk++++prsYYrCt+++C+vkk+ver aedp++v++tYeg+H h+
  Medtr8g092140.1 159 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQENCRVKKRVERLAEDPRMVITTYEGRHVHS 217
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-32143217IPR003657WRKY domain
SuperFamilySSF1182902.62E-28154218IPR003657WRKY domain
PROSITE profilePS5081129.321154219IPR003657WRKY domain
SMARTSM007745.3E-37159218IPR003657WRKY domain
PfamPF031062.3E-25160216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSQIIDHHLF EEENQISTQM GFIPFPTNLT FPSLDCNQSL KAFSSIASSL TSESDSTSNL  60
TQTLLTTNPQ KSKEYLTSSF GGSTPFLSLH GSIVNPWAIL GGEVISNCMN NSGKRNGVDH  120
RDNHLGVSTT MKMKKMKGRK KVREPRFCFK TLSTDVDVLD DGYKWRKYGQ KVVKNTQHPR  180
SYYRCTQENC RVKKRVERLA EDPRMVITTY EGRHVHSPSN DLEDSQTQSD NFLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-261532161174Probable WRKY transcription factor 4
2lex_A5e-261532161174Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g092140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1411131e-161AC141113.5 Medicago truncatula clone mth2-7h7, complete sequence.
GenBankAC1587371e-161AC158737.14 Medicago truncatula clone mth2-154f20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630131.21e-177probable WRKY transcription factor 13
TrEMBLG7LBC71e-176G7LBC7_MEDTR; Putative transcription factor WRKY family
STRINGAET046071e-161(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-51WRKY DNA-binding protein 13
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]