PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g092810.1
Common NameMTR_8g092810
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 463aa    MW: 51780.9 Da    PI: 10.2058
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g092810.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.7e-09555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     r++W+ eE+  l+ +v ++G g W++I +          R+  ++k++w++
  Medtr8g092810.1  5 RQKWSSEEEVALKAGVVKHGVGKWSKILKDPEfnhvlYIRSNIDLKDKWRN 55
                     89****************************99999998899********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.832160IPR017930Myb domain
SuperFamilySSF466895.22E-14258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-12456IPR009057Homeodomain-like
SMARTSM007176.1E-5459IPR001005SANT/Myb domain
PfamPF002491.4E-5555IPR001005SANT/Myb domain
CDDcd116603.83E-19656No hitNo description
SMARTSM005261.6E-9119184IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.09E-12120197IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.847121189IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.107.4E-12123191IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005388.9E-7126182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGATRQKWSS EEEVALKAGV VKHGVGKWSK ILKDPEFNHV LYIRSNIDLK DKWRNMSLKA  60
NGSSSGDNSQ LAIKRVRHQA PEQRDNSMAV NLVTTIDDEI LDVQPLQVKT DMLEIKGPER  120
SIKRLDNLIM EAISSLNEVD GSNKTTIASF IKNQYCAPAD FKNKLSAKLV DLVSSGKLIK  180
VKHRYMIAPT QAYSDRGGYP PMLLLEGRQK ASIKSDRDGG NIPTKSDIDY QKRKAEIDLE  240
LEKLKSMSLQ EVIACAAQAV AEAEAAMAEA EEATKEAEAA EAEADAAAAI AKAAEKSLRR  300
NNFVKAYPTL LYVLFLRPAT VLSLPLSFVS HRCRTTTILN SYDNHRSRRH HRRSPRQPIS  360
RRRRPHSSHT VGNPFGPPPS TTTVLTSNES SLRKQSPYPF RTPTRENRIQ IRPHSSQLQI  420
HSKLRENITE REKSGGQCDV RTAVASERTV EMLLVNREKD GW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g092810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1488210.0AC148821.3 Medicago truncatula strain A17 clone mth2-80k8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024629648.10.0telomere repeat-binding factor 1
RefseqXP_024629649.10.0telomere repeat-binding factor 1
TrEMBLG7LCB10.0G7LCB1_MEDTR; Myb transcription factor
STRINGAET046700.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.38e-65telomere repeat binding factor 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]