PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g093500.1
Common NameMTR_8g093500
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 276aa    MW: 30877.8 Da    PI: 6.909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g093500.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08129169954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Medtr8g093500.1 129 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 169
                      699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.72E-11111174No hitNo description
PROSITE profilePS5088815.046120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14125190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-13126185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-6130169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MENNQNNTSS AFTSTWNLEK METNEQNRII LQQDHHQVPM NSSVIWPQNN YSNMIMAPPP  60
PPSSSGSLSD ILGIHRIEDV EEQEEELGAM KEMMYKIAAM QPVDIDPATI RKPKRRNVRI  120
SEDPQSVAAR HRRERISEKI RILQRLVPGG TKMDTASMLD EAIRYVKFLK RQIKLLQSTP  180
QNQQQQHIQL PLSSQCINST TPSALLLSPS SGCDVWPFAP NLLLTSTTAA TVDLPAGVQF  240
DAGGHSHVHA CDGSSSFNHH EDSPYCTRFH QVKFA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g093500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743080.0AC174308.7 Medicago truncatula clone mth2-139i23, complete sequence.
GenBankAC1870440.0AC187044.4 Medicago truncatula clone mth2-135j6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024627548.10.0transcription factor HEC3
TrEMBLG7LE060.0G7LE06_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAET047280.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-45bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]