PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr8g093920.1

Common Name

MTR_8g093920, NF-YB15

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

NF-YB

Protein Properties

Length: 215aa MW: 24957.6 Da PI: 6.5067

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr8g093920.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	180.6	1.3e-56	39	134	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +eqdrflPianv+rimkkv+Pan+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfe+yveplk yl+kyr++eg Medtr8g093920.1 39 KEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEEYVEPLKCYLQKYRDIEG 132 89*******************************************************************************************9 PP NF-YB 96 ek 97 ek Medtr8g093920.1 133 EK 134 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.6E-54	32	162	IPR009072	Histone-fold
SuperFamily	SSF47113	2.4E-40	41	158	IPR009072	Histone-fold
Pfam	PF00808	9.6E-28	44	108	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	9.0E-21	72	90	No hit	No description
PROSITE pattern	PS00685	0	75	91	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	9.0E-21	91	109	No hit	No description
PRINTS	PR00615	9.0E-21	110	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MDDESHSNLP NGFNTENPET HCLKTINNNN HNHHHNSNKE QDRFLPIANV GRIMKKVIPA 60 NGKISKDAKE TVQECVSEFI SFVTGEASDK CQREKRKTIN GDDIIWAITT LGFEEYVEPL 120 KCYLQKYRDI EGEKVNVPKQ QRSEQRLHQH QHQHNQDELN NQHFNNSVYT STNLMSQTPY 180 MTTDQPFPLP FSPNSIQKQL RQQDQIDSIG HWYE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	6e-45	37	129	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	6e-45	37	129	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and green siliques. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr8g093920.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC152349	0.0	AC152349.12 Medicago truncatula clone mth2-52p10, complete sequence.
GenBank	JQ918288	0.0	JQ918288.1 Medicago truncatula nuclear transcription factor Y subunit B15 (NF-YB15) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003630291.1	1e-161	nuclear transcription factor Y subunit B-3
Swissprot	Q9SIT9	5e-72	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	G7LE45	1e-160	G7LE45_MEDTR; Nuclear transcription factor Y protein
STRING	AET04767	1e-160	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13249	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	1e-70	nuclear factor Y, subunit B7

Link Out ? help Back to Top
Phytozome	Medtr8g093920.1
Entrez Gene	11437490

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]