PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g098275.1
Common NameMTR_8g098275
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 602aa    MW: 67959.6 Da    PI: 5.8788
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g098275.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.94.8e-15401447455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h   ErrRR+++N++f +Lr+++P++      K +K++iL  A+eY+++L+
  Medtr8g098275.1 401 NHVLSERRRRAKLNERFLTLRSMVPSN-----SKDDKVSILDDAIEYLRKLE 447
                      78999*********************8.....7****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.7E-477182IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.009397446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-18400463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-14400451No hitNo description
Gene3DG3DSA:4.10.280.107.7E-18401458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-12401447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-15403452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MVPQNMKEQL ALAVRSIQWS YVIFWSESVN QPGVLSWGEG YYNGEIKTRK TSQGVELSSD  60
EIGLQRSEQL RELFRSLKPV DTNPQTKRPS AALSPDDLTD TEWYYLVCMS FVFNIGQGVP  120
GRALENGQPI WLIDAYSVDC KEFSRALLAK TVVCFPFMKG VIELGTTDHV SEDLSLIQQI  180
KTSLLNSLSV DDPINARATL SSRNNEGVAC VAFDDNDYDV ELIPEVGYDI INTTTSPNGS  240
SNALQANQLR NETFMVESWQ VLDDDLSNCV HNSVNSSDCI SQNISSAPKV GEDCNNNQKM  300
SLVDPLSEDW HYQKILSELL KSNDQLTMGM HFQNFHQESS FCVWNKGVPV NFQRPRQGTS  360
QKLLKKILFE VPRMHTDGLL ESQEENDYRE GTRLEADEGM NHVLSERRRR AKLNERFLTL  420
RSMVPSNSKD DKVSILDDAI EYLRKLEKKI RELEAQREPT GIESRSKKSH HDMVERTTDH  480
YYNNKTNNGK KPMVKKRKIC DIEETRREIC SDASKGSSNK NVTVSMSDNG VVIEMKCPSK  540
AGRILEIMEA VNNLNIDFNS VQSTEEADGS LHLIIKSKFK GPANATTKRI KQALQKVASK  600
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-131918024188Transcription factor MYC3
4rqw_B3e-131918024188Transcription factor MYC3
4rru_A3e-131918063227Transcription factor MYC3
4rs9_A3e-131918024188Transcription factor MYC3
4ywc_A3e-131918063227Transcription factor MYC3
4ywc_B3e-131918063227Transcription factor MYC3
4yz6_A3e-131918024188Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.175470.0pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g098275.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1995690.0KM199569.1 Trifolium repens isolate Tr_JAF13 bHLH protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024629222.10.0transcription factor EGL1 isoform X1
TrEMBLA0A072U5D10.0A0A072U5D1_MEDTR; BHLH transcription factor
STRINGXP_004503712.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-160bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]