PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g098275.3
Common NameMTR_8g098275
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 445aa    MW: 50172.3 Da    PI: 6.3045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g098275.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.53.2e-15244290455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h   ErrRR+++N++f +Lr+++P++      K +K++iL  A+eY+++L+
  Medtr8g098275.3 244 NHVLSERRRRAKLNERFLTLRSMVPSN-----SKDDKVSILDDAIEYLRKLE 290
                      78999*********************8.....7****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.009240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-18243306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-13243294No hitNo description
PfamPF000101.2E-12244290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-18244301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-15246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MKGVIELGTT DHVSEDLSLI QQIKTSLLNS LSVDDPINAR ATLSSRNNEG VACVAFDDND  60
YDVELIPEVG YDIINTTTSP NGSSNALQAN QLRNETFMVE SWQVLDDDLS NCVHNSVNSS  120
DCISQNISSA PKVGEDCNNN QKMSLVDPLS EDWHYQKILS ELLKSNDQLT MGMHFQNFHQ  180
ESSFCVWNKG VPVNFQRPRQ GTSQKLLKKI LFEVPRMHTD GLLESQEEND YREGTRLEAD  240
EGMNHVLSER RRRAKLNERF LTLRSMVPSN SKDDKVSILD DAIEYLRKLE KKIRELEAQR  300
EPTGIESRSK KSHHDMVERT TDHYYNNKTN NGKKPMVKKR KICDIEETRR EICSDASKGS  360
SNKNVTVSMS DNGVVIEMKC PSKAGRILEI MEAVNNLNID FNSVQSTEEA DGSLHLIIKS  420
KFKGPANATT KRIKQALQKV ASKF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g098275.3
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1995690.0KM199569.1 Trifolium repens isolate Tr_JAF13 bHLH protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447039.10.0transcription factor GLABRA 3 isoform X2
TrEMBLA0A072TUG10.0A0A072TUG1_MEDTR; BHLH transcription factor
STRINGXP_004503712.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.13e-81bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]