PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g098860.1
Common NameMTR_8g098860
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 321aa    MW: 36509.4 Da    PI: 6.2644
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g098860.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+ +++ +G g+W+ ++ + g+ R++k+c++rw +yl
  Medtr8g098860.1 14 RGLWSPEEDEKLITYITTHGYGCWSEVPDKAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding53.46.1e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+T++E++l++ ++   G++ W+ Ia++++ gRt++++k++w+++
  Medtr8g098860.1  67 RGRFTPDEEKLIISLHSVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                      89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-24664IPR009057Homeodomain-like
PROSITE profilePS5129416.657961IPR017930Myb domain
SuperFamilySSF466899.36E-3011108IPR009057Homeodomain-like
SMARTSM007178.1E-121363IPR001005SANT/Myb domain
PfamPF002491.3E-141461IPR001005SANT/Myb domain
CDDcd001678.68E-111761No hitNo description
PROSITE profilePS5129425.50562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-2565116IPR009057Homeodomain-like
SMARTSM007172.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.2E-1567111IPR001005SANT/Myb domain
CDDcd001677.31E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGQHSCCNQQ KVKRGLWSPE EDEKLITYIT THGYGCWSEV PDKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPDEEKLIIS LHSVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKHS  120
SSSNSTTNNV TQNVVHHSHL NYNYSNIKLD QFANQENITT AKPPETTLFS PTCPIFMFEP  180
SDSLHGTTTE SSCNLQTDQY FQDSINGLSS ETWNQVQSSL PPPISTTFSM DTMNYLPPLI  240
ENVENMDEEG DHRGVLECLQ GHWVEETHQQ CPNNFLFWDN IVQGHGLGGE EQLPPNSSNM  300
GTNSTTLSPF PSSSFRDNNY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26141167108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.35391e-125glandular trichome| leaf| pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g098860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0948201e-121BT094820.1 Soybean clone JCVI-FLGm-19C13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447096.10.0transcription repressor MYB6
TrEMBLA0A072TW590.0A0A072TW59_MEDTR; Myb transcription factor
STRINGXP_004503677.11e-141(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41123358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.14e-84myb domain protein 103
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]