PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr8g099880.1

Common Name

MTR_8g099880

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bHLH

Protein Properties

Length: 328aa MW: 37209.7 Da PI: 8.0148

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr8g099880.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.9	2e-09	155	202	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq Medtr8g099880.1 155 SHSLAERVRREKISERMKILQQLVPGC----DRVTGKALVLDEIINYVQSLQ 202 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.3E-16	149	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.33E-10	149	206	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.3E-16	151	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.726	151	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	155	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-10	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MAAFSYQYQQ PFLVDSTYFT NINTSLPPSH LFHNHQELSL SNQETSCVDQ NSKNSISNNQ 60 SPESSMVVDN LEKGEQVTQK AVTSMEKKRR IRNKTSLTKD ISKEEKSKKQ KKSSGEGMKG 120 EEKKKEEKKD QKKNVEEVPT GYIHVRARRG QATDSHSLAE RVRREKISER MKILQQLVPG 180 CDRVTGKALV LDEIINYVQS LQNQVEFLSM KLASVNPIFF DFAMDLDTLL VRPDHQRLNS 240 ITSPSTPIPH VSLCSSNHAT PFADTITTSF HPANNDYVLD YPTSIFLQGQ RSNTFFEHTD 300 GPFWDVEDQR QKLLNPYGFG NNTCSLN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr8g099880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003630566.1	0.0	transcription factor bHLH137
Swissprot	Q93W88	2e-53	BH137_ARATH; Transcription factor bHLH137
TrEMBL	G7LI45	0.0	G7LI45_MEDTR; Basic helix loop helix protein BHLH8
STRING	AET05042	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4182	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	8e-51	bHLH family protein

Link Out ? help Back to Top
Phytozome	Medtr8g099880.1
Entrez Gene	11433206

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]