PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g101650.1
Common NameMTR_8g101650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 281aa    MW: 30850.5 Da    PI: 9.2282
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g101650.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.3e-13106150347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I++ + + Rt+ q+ s+ qky
  Medtr8g101650.1 106 PWTEEEHRMFLVGLEKLGKGDWRGISKNFVTSRTPTQVASHAQKY 150
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8799155IPR017930Myb domain
SuperFamilySSF466897.18E-18100155IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-18102153IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-11103149IPR009057Homeodomain-like
SMARTSM007176.7E-11103153IPR001005SANT/Myb domain
PfamPF002494.2E-11106150IPR001005SANT/Myb domain
CDDcd001671.42E-9106151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRRKCSHCG KIGHNCRTCT SFTLGGLRLF GVQLSSSSSS SSSSNMIKKS FSMDTFPSPS  60
SPSSSFSSST SLTNIDENHY HKSTSNIAYL SDCFIGPPQE RKKGVPWTEE EHRMFLVGLE  120
KLGKGDWRGI SKNFVTSRTP TQVASHAQKY FLRLATINKK RRSSLFDLVG SKKTNTKDQG  180
YANSVVNLGD KFEDKCKCEV EINDGTTLSY FKQEEEAKSE KQENTNYSTT NWLYDSSNCA  240
AVPNLDLTLS VASPNANKTK LEQNQPSPAG SFLLGPISVT *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.118480.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g101650.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1400630.0BT140063.1 Medicago truncatula clone JCVI-FLMt-13F13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630638.10.0transcription factor MYBS3
SwissprotQ7XC572e-45MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLG7LJK10.0G7LJK1_MEDTR; MYB-like transcription factor family protein
STRINGAET051140.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-43MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]
  4. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]