PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g102800.1
Common NameMTR_8g102800
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 236aa    MW: 26281.1 Da    PI: 4.8501
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g102800.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.8e-183585155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Medtr8g102800.1 35 PVYRGVRMRA-WGKWVSEIREPRK---KNRIWLGTFATPEMAARAHDVAALAIKG 85
                     68*****998.**********854...59**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-133585IPR001471AP2/ERF domain
SMARTSM003806.9E-363699IPR001471AP2/ERF domain
PROSITE profilePS5103222.8793693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-323694IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-213694IPR016177DNA-binding domain
PRINTSPR003676.5E-103748IPR001471AP2/ERF domain
CDDcd000181.19E-323795No hitNo description
PRINTSPR003676.5E-105975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDECNHLSLP KTSSSAHLPD PVEKRPKRPR ESNHPVYRGV RMRAWGKWVS EIREPRKKNR  60
IWLGTFATPE MAARAHDVAA LAIKGNSAIL NFPELAASMP RPDSNSPRDV QAAAVKAAAM  120
EVPDQQTSSS TFSPSPPSHS LSSSSSSCSL AVSSSDEPST PDELDEIVEL PALGTSFELP  180
DPSNMVFSDP WLYSHSWYNL NSIYDERDYF MEDQISMQQE NNNSENISKY DSFWF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1832931072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g102800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1375460.0AC137546.33 Medicago truncatula clone mth2-24g3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630740.21e-172ethylene-responsive transcription factor TINY
SwissprotQ9LYD32e-53DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLG7L8481e-171G7L848_MEDTR; Ethylene response factor
STRINGAET052161e-170(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]