PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g105600.1
Common NameMTR_8g105600
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 581aa    MW: 64926.8 Da    PI: 7.3912
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g105600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.57.1e-24187240155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r++W+ eLHe+F++av++L  + kA+Pktile+mkv+gLt+e+v SHLQkYRl
  Medtr8g105600.1 187 KERVVWSLELHEQFMKAVKEL-DASKAVPKTILEHMKVPGLTREQVGSHLQKYRL 240
                      68*******************.999*****************************8 PP
2Response_reg49.13e-17151211107
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH.HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEE.STTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell.kekdpDlillDiempgmdGlellkeireeepklpiivvt.ahgeeedalealka 92 
                      vl++d +  +++++++ l++ +y +v+++ + ++a++l+ ++ ++Dl+ll  +mp+md +++l++++++  ++p+i+   ++g+ + +l+a++ 
  Medtr8g105600.1  15 VLVIDHDIHLLNAIEKKLSQFNY-QVTTCWTVSSAMNLIaQKVHFDLVLLETQMPDMDSFDFLQQLTQQI-DIPVIMTMcSEGSTTGILNAIEN 106
                      899********************.99999999999999945556**********************9988.8998888779999********** PP

                      TESEEEESS--HHHH CS
     Response_reg  93 GakdflsKpfdpeel 107
                      Ga d+ +Kpf+++++
  Medtr8g105600.1 107 GACDCWVKPFSENQV 121
                      **********99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.3E-2512143No hitNo description
SuperFamilySSF521725.69E-2412145IPR011006CheY-like superfamily
SMARTSM004484.9E-1313125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011028.78514129IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.8E-1315121IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.64E-1716133No hitNo description
PROSITE profilePS512949.077184247IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-24185244IPR009057Homeodomain-like
SuperFamilySSF466892.69E-16185244IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-21187240IPR006447Myb domain, plants
PfamPF002494.5E-7189239IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MTFSFGNVFP ANVKVLVIDH DIHLLNAIEK KLSQFNYQVT TCWTVSSAMN LIAQKVHFDL  60
VLLETQMPDM DSFDFLQQLT QQIDIPVIMT MCSEGSTTGI LNAIENGACD CWVKPFSENQ  120
VKYMWHHAVR KMMKGNKKQK INEQLGVEGS QIRARDDSNL CLNDEDIPEP PPTKKTKKRK  180
KTKKTKKERV VWSLELHEQF MKAVKELDAS KAVPKTILEH MKVPGLTREQ VGSHLQKYRL  240
YLNKHQQEHE QALLVVESNS SHDRSPKLYF QAYDASAHAV VLESSQWSHN SHVAEQQYPM  300
AYACSSQQVP RKLLPRHFPQ QPNMNLHHGY ATWEQQLPSE YYIADHAVGL GSLTANNSNA  360
MLQQEEDINN QQQSPMHVPH MNNAVNDGVS SVDNIVEVNN TITDFGEATM QVEIGPQVQE  420
LERVVAGPQD QELGRVVAGP QAQPQELERV VAGPQDQELG RVVIAPQAQP QELGRVVAGP  480
HAQELGRMVA APQDQPQKLG RVMAAPHAQP QKLGRVVAGP QAQPQELGMV VTGSQTQKLG  540
RVVAGPQAQE LGRMVAAPQT QPQELGRGKR YKKANTRYTQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-14187242156Transcription factor LUX
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176180KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g105600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1401040.0AC140104.22 Medicago truncatula clone mth2-10g22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024628307.10.0two-component response regulator ARR1
TrEMBLG7LBF70.0G7LBF7_MEDTR; Response regulator receiver domain protein
STRINGAET054440.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.12e-44response regulator 14
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]