PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g442330.1
Common NameMTR_8g442330
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ZF-HD
Protein Properties Length: 140aa    MW: 15756.8 Da    PI: 7.4626
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g442330.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer50.64.4e-1614511553
      ZF-HD_dimer 15 aslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFH 53
                      s+Gg+++DGC+Ef+p+ g+eg ++ +kC+AC CH+nFH
  Medtr8g442330.1 14 SSIGGYSLDGCREFLPA-GAEGATNFFKCTACKCHKNFH 51
                     589*************9.999****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152314.239554IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-91451IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.5E-151551IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.606.4E-1290139IPR009057Homeodomain-like
SuperFamilySSF466897.17E-693139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MLPENVTVFN GKYSSIGGYS LDGCREFLPA GAEGATNFFK CTACKCHKNF HCIVPATNLV  60
VPSKNGIHIS WEELEENVHV RNVEPINDDG RDGARQGTSN SNKWFRTKFT HEQRKKMLDF  120
AMTLGWKTKK NDENVVEEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g442330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445128.11e-102zinc-finger homeodomain protein 1
TrEMBLA0A072TNS11e-100A0A072TNS1_MEDTR; Putative transcription factor ZF-HD family
STRINGAET027411e-35(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-22homeobox protein 22
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]