PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g466800.2
Common NameMTR_8g466800
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 403aa    MW: 44845.2 Da    PI: 6.1327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g466800.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.6e-063353731154
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Medtr8g466800.2 335 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 373
                      5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.576324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.09E-7334377No hitNo description
SuperFamilySSF474591.02E-11334391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0049335379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-9338381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAEEQFQASG NWWETPARNM RFESVEQQQQ QSSSFGGWQQ QQQHHDTMSA SGSSSVVFHD  60
TTQKLQPSDS STSNNDSNLH MMGLGLSSQN IDWNQASILR NEKASEGSFR SMLQENLNST  120
GTNFEQETSG IGIGVELSHQ VNWRQEKLFS NESSSNEFKQ VNRGFSLDQP QFSPQYSSGD  180
SNMISQMDSS ALYGNPSMLQ GLLGTETNQI QPQHGNSFEN RSMNFPYSST SYGLSTNELI  240
PSWSKVSHQN QKQHQQPNNQ LHFTNNAPFW NASETTIKDA SSSFLPPFTT PNFGAQTKNI  300
SEGRDSSAMV KKSGSEPAPK RSKNETPSPL PAFKVRKEKM GDRITALQQL VSPFGKTDTA  360
SVLSEAIEYI KFLHEQVTVL STPYMKSGAP IQHQQVKYID II*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g466800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445670.10.0transcription factor bHLH123 isoform X1
TrEMBLA0A072TQL30.0A0A072TQL3_MEDTR; BHLH transcription factor-like protein
STRINGAES837430.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-56bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]