PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g467420.1
Common NameMTR_8g467420
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 169aa    MW: 19069.1 Da    PI: 4.2797
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g467420.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.49.3e-0895134444
             FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreee 44 
                        Y+k  GF +rk++ +++  +g i++r+fvC+k+g r+++
  Medtr8g467420.1  95 YPYGKCKGFAIRKANARSN-SSGIIIMRQFVCNKHGLRARS 134
                      579**********987766.8999************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-595134IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MVVKEHHEDW LDADSTEVEY TYDLYEDEEH HISSDAKDDV DGDADDDVYD ESVQQEGSIS  60
DELVGDRLVN VNFIASDENL KLEFGIVDEA YNFNYPYGKC KGFAIRKANA RSNSSGIIIM  120
RQFVCNKHGL RARSTYLGMI GREIIDVSPE QIVKQGFMCI TKPKKGDM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g467420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2268270.0AC226827.3 Medicago truncatula strain A17 clone mth2-156k5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631935.12e-49protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A072U1Q91e-121A0A072U1Q9_MEDTR; FAR1 DNA-binding domain protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]