PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.A00131.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 218aa MW: 23726 Da PI: 9.7692

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.A00131.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.9	3.3e-38	32	128	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCa+Ck++rr+C++dC lapyfpa+++k+f n+hklFG++n++++lk++pe++r++a+++++ eA+arardPv G++gvi++l+++++ + +e Migut.A00131.1.p 32 ACAVCKYQRRRCTPDCKLAPYFPAHKQKEFLNAHKLFGVHNIVQILKKVPESRRQTAAETIIIEADARARDPVWGCLGVIRELERRIQLSTKE 124 7****************************************************************************************9999 PP DUF260 94 lall 97 l+++ Migut.A00131.1.p 125 LHTT 128 9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	33	No hit	No description
PROSITE profile	PS50891	24.868	31	132	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-37	32	127	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MKPSTSTKPP SPGGGGGGGS SSSSSSAAAF QACAVCKYQR RRCTPDCKLA PYFPAHKQKE 60 FLNAHKLFGV HNIVQILKKV PESRRQTAAE TIIIEADARA RDPVWGCLGV IRELERRIQL 120 STKELHTTLA LLDFYRSRNL PNSGVYGGIN INNNINVNVN HVVNRDKKPM NMIGGVGNML 180 LHEGSSSQVM NGDDQNQELL AGVDAMEQFL NVSRFSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-27	22	129	1	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-27	22	129	1	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.A00131.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012857741.1	1e-163	PREDICTED: LOB domain-containing protein 22-like
TrEMBL	A0A022PXW1	1e-113	A0A022PXW1_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.A00131.1.p	1e-162	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	5e-29	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Migut.A00131.1.p