PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.A00326.2.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 166aa    MW: 19262.5 Da    PI: 9.9959
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.A00326.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.61.1e-30959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien+snrqvt+skRrngi+KKA+E+SvLCda v+viif+s+gk++e++s
  Migut.A00326.2.p  9 KRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCS 59
                      79***********************************************96 PP
2K-box76.66.3e-2671152182
             K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                       y+k sgk+l++ak+e+l++e++++kke++++q e+Rhl+Ged+++L++keL+ Le++Le+++++ ++k++e+++++ ++ ++
  Migut.A00326.2.p  71 YHKLSGKRLWDAKHEHLDNEINRIKKENDSMQIELRHLKGEDITTLNYKELMVLEEALENGISTLKAKQMEFVRMMRKHVRQ 152
                       7899*********************************************************************999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.282161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-37296IPR002100Transcription factor, MADS-box
CDDcd002655.15E-42280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-1383143IPR002487Transcription factor, K-box
PROSITE profilePS5129711.02284165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIMK KAKEISVLCD AHVSVIIFAS SGKMHEFCSP  60
STTLVDMLDQ YHKLSGKRLW DAKHEHLDNE INRIKKENDS MQIELRHLKG EDITTLNYKE  120
LMVLEEALEN GISTLKAKQM EFVRMMRKHV RQTLLFLNFP LALYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-17159159MEF2 CHIMERA
6byy_B9e-17159159MEF2 CHIMERA
6byy_C9e-17159159MEF2 CHIMERA
6byy_D9e-17159159MEF2 CHIMERA
6bz1_A9e-17159159MEF2 CHIMERA
6bz1_B9e-17159159MEF2 CHIMERA
6bz1_C9e-17159159MEF2 CHIMERA
6bz1_D9e-17159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.A00326.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8534241e-147HQ853424.1 Halleria lucida MADS box transcription factor (GLO1) mRNA, partial cds.
GenBankKM1120221e-147KM112022.1 Catalpa bungei MIKC-type MADS-box transcriptional regulator pistillata (PI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855839.11e-106PREDICTED: floral homeotic protein GLOBOSA isoform X1
SwissprotQ033781e-103GLOB_ANTMA; Floral homeotic protein GLOBOSA
TrEMBLA0A022Q6361e-104A0A022Q636_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-71MIKC_MADS family protein
Publications ? help Back to Top
  1. Tröbner W, et al.
    GLOBOSA: a homeotic gene which interacts with DEFICIENS in the control of Antirrhinum floral organogenesis.
    EMBO J., 1992. 11(13): p. 4693-704
    [PMID:1361166]
  2. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  3. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]