PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.A00461.1.p

Common Name

MIMGU_mgv1a020476mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NAC

Protein Properties

Length: 336aa MW: 37702.1 Da PI: 8.9928

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.A00461.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.3	4.1e-55	5	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yL +k+++ ++++ +++++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++ Migut.A00461.1.p 5 LPPGFRFHPTDEELITYYLINKISDANFTA-RAVADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATTTGYWKTTGKDKEIY 96 79***********************999.88***********99999************************************ PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++elvg+kktLvfykgrap+gek++Wvmheyr+ Migut.A00461.1.p 97 NSnTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRF 132 9867788*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-63	3	154	IPR003441	NAC domain
PROSITE profile	PS51005	60.899	5	154	IPR003441	NAC domain
Pfam	PF02365	3.1E-28	6	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MEEKLPPGFR FHPTDEELIT YYLINKISDA NFTARAVADV DLNKCEPWDL PGKAKMGEKE 60 WYFFSLRDRK YPTGVRTNRA TTTGYWKTTG KDKEIYNSNT SELVGMKKTL VFYKGRAPRG 120 EKSNWVMHEY RFHSKSAYRT TKQDEWVVCR VFQKSGGGVK KLYSSNQLSR AVINNPNYHY 180 TNEILLPHST NNNNNPMQLL PQLFIQPPPP PPPDNNNFHF PSRNYYNNII TPPHHNHIQD 240 FNKVFNAAST STAVNYAAGG GGGCFTISGL NLNLGGGAAA AQPPLMNQQI NVGSCVHGGA 300 GGYDHHLIDG GNTPNNNNRF MDQCGDLDNY WPSFN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	5	160	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	5	160	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	5	160	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	5	160	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	5	160	20	174	NAC domain-containing protein 19
3swm_B	2e-55	5	160	20	174	NAC domain-containing protein 19
3swm_C	2e-55	5	160	20	174	NAC domain-containing protein 19
3swm_D	2e-55	5	160	20	174	NAC domain-containing protein 19
3swp_A	2e-55	5	160	20	174	NAC domain-containing protein 19
3swp_B	2e-55	5	160	20	174	NAC domain-containing protein 19
3swp_C	2e-55	5	160	20	174	NAC domain-containing protein 19
3swp_D	2e-55	5	160	20	174	NAC domain-containing protein 19
4dul_A	2e-55	5	160	17	171	NAC domain-containing protein 19
4dul_B	2e-55	5	160	17	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.A00461.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012837283.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A022RBP3	0.0	A0A022RBP3_ERYGU; Uncharacterized protein
STRING	Migut.A00461.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-102	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Migut.A00461.1.p