PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.A00569.1.p

Common Name

MIMGU_mgv1a009029mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

GRF

Protein Properties

Length: 355aa MW: 38192.2 Da PI: 8.3312

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.A00569.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76	4e-24	90	134	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ Migut.A00569.1.p 90 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRGRNRSRKPVES 134 79****************************************985 PP
2	QLQ	66.2	8e-23	29	64	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i++ Migut.A00569.1.p 29 PFTAVQWQELEHQAMIYKYLVAGLPVPPDLVMPIRR 64 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.2E-13	28	64	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.4E-17	29	63	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.828	29	64	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.831	90	134	IPR014977	WRC domain
Pfam	PF08879	6.5E-21	91	133	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MSGTASTSVA VGVGMGGGGE MGYGGYKPPF TAVQWQELEH QAMIYKYLVA GLPVPPDLVM 60 PIRRSFDALS ARFFHHPSLG YCSYYGKKFD PEPGRCRRTD GKKWRCSKDA HPDSKYCERH 120 MHRGRNRSRK PVESHSSTPS TSSQSSLSTA MMSHLSSGGS GGGGSSGIFQ GGGGRGGGGT 180 FRSVPVYSGV GSEGLSFGSS VAKLQMEPIS YGMDDKEFRY MHGLTPDADD SSFSPEASGS 240 LGLGSNAGTA ATWHLMPSSS SLLKQKSDSQ LLFGHQNNSH SFESISQRQQ EQQQQHPVHP 300 FFSEWPTTKE SWSTLEDQDG SHKNILFSST QLSMSIPRAS LDFSARSAYS PNDA*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MSGTASTSVA VGVGMGGGGE MGYGGYKPPF TAVQWQELEH QAMIYKYLVA GLPVPPDLVM  60
PIRRSFDALS ARFFHHPSLG YCSYYGKKFD PEPGRCRRTD GKKWRCSKDA HPDSKYCERH  120
MHRGRNRSRK PVESHSSTPS TSSQSSLSTA MMSHLSSGGS GGGGSSGIFQ GGGGRGGGGT  180
FRSVPVYSGV GSEGLSFGSS VAKLQMEPIS YGMDDKEFRY MHGLTPDADD SSFSPEASGS  240
LGLGSNAGTA ATWHLMPSSS SLLKQKSDSQ LLFGHQNNSH SFESISQRQQ EQQQQHPVHP  300
FFSEWPTTKE SWSTLEDQDG SHKNILFSST QLSMSIPRAS LDFSARSAYS PNDA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	179	SGIFQGGGGRGGGGT
2	172	178	GGRGGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.A00569.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012854248.1	0.0	PREDICTED: growth-regulating factor 3-like
Refseq	XP_012854249.1	0.0	PREDICTED: growth-regulating factor 3-like
TrEMBL	A0A022Q7S0	0.0	A0A022Q7S0_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA743	23	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	5e-49	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Migut.A00569.1.p