PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.A00576.1.p

Common Name

LOC105973798, MIMGU_mgv1a012214mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

G2-like

Protein Properties

Length: 259aa MW: 29105.6 Da PI: 8.9338

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.A00576.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.1	4.1e-33	20	74	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Migut.A00576.1.p 20 KPRLRWTSDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 74 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-32	17	77	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.564	17	77	IPR017930	Myb domain
SuperFamily	SSF46689	1.51E-16	19	77	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.3E-25	20	75	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-8	22	73	IPR001005	SANT/Myb domain
Pfam	PF14379	5.7E-23	123	168	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MERMYGGGGG GGLMMTRDSK PRLRWTSDLH DRFVDAVTKL GGPDKATPKS VLRLMGLKGL 60 TLYHLKSHLQ KYRLGQQQQQ AKKQNVLDHN RENSESSYGH HNMRIASTSA NSSSMNSEQG 120 DIPIAEALRC QIEVQKTLQQ QLEVQKKLQM RIEAQGKYLQ SILEKAQHSL STDINQSENL 180 ESTKAQLTDF NLALSNFMQT INGDEINGNK EARETRDGHI KLETEGPSIE FDLNSRSSYD 240 FIGINNRAVL EANQFQNR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-18	20	73	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	20	73	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	20	73	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	20	73	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.A00576.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012854303.1	0.0	PREDICTED: myb family transcription factor APL
Swissprot	C0SVS4	7e-82	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A022Q6L9	0.0	A0A022Q6L9_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4416	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	2e-62	G2-like family protein

Link Out ? help Back to Top
Phytozome	Migut.A00576.1.p
Entrez Gene	105973798

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]