PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.A00653.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 199aa    MW: 23050.7 Da    PI: 6.9424
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.A00653.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.61e-20951143
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                      k+i n   rqvt++kRr+g++KKAeELS+LCdae+ ++i+ss+
  Migut.A00653.1.p  9 KKIANGAARQVTLTKRRKGLFKKAEELSILCDAEIGLLIISSS 51
                      679999*********************************9986 PP
2K-box371.4e-13981762199
             K-box  21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       ++ ++ke+ +  +++R++  e+L+ Ls+ eL++Leq +e +l++i +kK+e ++++i++lq+k+ +l e nk Lr++++
  Migut.A00653.1.p  98 FSEINKEVAERSHQLRRMREEELQGLSIDELHRLEQSMEAGLRRIMEKKEEKIMREINQLQEKMMQLMEGNKLLRREVM 176
                       55667777777789999999********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.9E-26164IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.694152IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-15323IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-24381IPR002100Transcription factor, MADS-box
PfamPF003191.9E-181051IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-153859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.19891182IPR002487Transcription factor, K-box
PfamPF014861.8E-1196175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAREKMKIKK IANGAARQVT LTKRRKGLFK KAEELSILCD AEIGLLIISS SSITPIHFFT  60
YATTSMKDII ERYKLHSKNL DELEQPSELQ QLVRDSNFSE INKEVAERSH QLRRMREEEL  120
QGLSIDELHR LEQSMEAGLR RIMEKKEEKI MREINQLQEK MMQLMEGNKL LRREVMDIIT  180
NGSGDEEVSN DVLCQLCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-15177173MEF2 CHIMERA
6byy_B7e-15177173MEF2 CHIMERA
6byy_C7e-15177173MEF2 CHIMERA
6byy_D7e-15177173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.A00653.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012854196.11e-129PREDICTED: MADS-box protein JOINTLESS-like
SwissprotQ9FUY67e-69JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A022Q8281e-120A0A022Q828_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9382377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.17e-50MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]