PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.A00654.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

M-type_MADS

Protein Properties

Length: 68aa MW: 7612.08 Da PI: 11.0122

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.A00654.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68	8.9e-22	9	51	1	43
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k+i n rqvt++kRr+g++KKAeELS+LCdae+ ++i+ss+ Migut.A00654.1.p 9 KKIANVAARQVTLTKRRKGLFKKAEELSILCDAEIGLLIISSS 51 68999***********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.83E-21	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.2E-26	1	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.212	1	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-19	10	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 68 aa Download sequence Send to blast
MGREKMKIKK IANVAARQVT LTKRRKGLFK KAEELSILCD AEIGLLIISS SSITPIHFFT 60 YATTRSLS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.
UniProt	Probable transcription factor.
UniProt	Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.A00654.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012854196.1	1e-27	PREDICTED: MADS-box protein JOINTLESS-like
Swissprot	Q5K4R0	1e-18	MAD47_ORYSJ; MADS-box transcription factor 47
Swissprot	Q6VAM4	3e-19	MAD23_ORYSJ; MADS-box transcription factor 23
Swissprot	Q9FUY6	2e-18	JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBL	A0A022Q6V9	3e-38	A0A022Q6V9_ERYGU; Uncharacterized protein (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	5e-17	AGAMOUS-like 24

Link Out ? help Back to Top
Phytozome	Migut.A00654.1.p

Publications ? help Back to Top
Lee S,Choi SC,An G Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses. Plant J., 2008. 54(1): p. 93-105 [PMID:18182025] Lee S,Jeong DH,An G A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses. Plant Signal Behav, 2008. 3(7): p. 471-4 [PMID:19704489] Puig J, et al. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70 [PMID:23466806] Yu C, et al. The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice. PLoS ONE, 2014. 9(8): p. e105597 [PMID:25140876] Nakano T,Kato H,Shima Y,Ito Y Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities. Plant Cell Physiol., 2015. 56(6): p. 1097-106 [PMID:25746985] Wang H, et al. A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway. Plant Physiol., 2016. 170(4): p. 2365-77 [PMID:26858364]