PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.A00897.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23618.2 Da    PI: 9.8807
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.A00897.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.35.4e-30959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krie  s rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye+ss
  Migut.A00897.1.p  9 KRIEKASSRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSPSGKLYEFSS 59
                      79***********************************************96 PP
2K-box83.74.1e-2881175599
             K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                       sg++++e++ + l++e a L+ +ie Lq + R+llG++L+s+s keL++LeqqL++sl +iR++Kn l+++qie+l+++ek+l +en++Lr+k
  Migut.A00897.1.p  81 SGRRTKEENIQDLKNETAELQMKIELLQDTERRLLGQCLDSCSTKELENLEQQLQRSLGNIRARKNTLFRDQIEQLKQQEKNLMKENTELRQK 173
                       5566999*************************************************************************************9 PP

             K-box  98 le 99 
                        e
  Migut.A00897.1.p 174 CE 175
                       86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.399161IPR002100Transcription factor, MADS-box
SMARTSM004327.8E-41160IPR002100Transcription factor, MADS-box
CDDcd002652.80E-41377No hitNo description
SuperFamilySSF554556.54E-32380IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.2E-281057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-303859IPR002100Transcription factor, MADS-box
PfamPF014865.3E-2586175IPR002487Transcription factor, K-box
PROSITE profilePS5129714.93990180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MVRGKTQMKR IEKASSRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSP SGKLYEFSSS  60
STMINKTIER YQKNAKSTIT SGRRTKEENI QDLKNETAEL QMKIELLQDT ERRLLGQCLD  120
SCSTKELENL EQQLQRSLGN IRARKNTLFR DQIEQLKQQE KNLMKENTEL RQKCEMVDLQ  180
LSIPQVVQVL PTTRTIEVET ALFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-18171169MEF2 CHIMERA
6byy_B7e-18171169MEF2 CHIMERA
6byy_C7e-18171169MEF2 CHIMERA
6byy_D7e-18171169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.A00897.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835497.11e-145PREDICTED: agamous-like MADS-box protein AGL19
SwissprotO827433e-64AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA9YTS52e-86A9YTS5_9LAMI; SOC1-like protein 2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.11e-66AGAMOUS-like 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]