PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.A00907.1.p
Common NameLOC105956194, MIMGU_mgv1a011133mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family TALE
Protein Properties Length: 292aa    MW: 33220.1 Da    PI: 6.4474
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.A00907.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox246.5e-082402732154
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       k +yp+++++++L +++gL+ +q+ +WF N+R +
  Migut.A00907.1.p 240 KWPYPTEDDKAKLVEQTGLQLKQINNWFINQRKR 273
                       458*****************************87 PP
2ELK24.37.5e-09194215122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK +L++++++++ ++++E++
  Migut.A00907.1.p 194 ELKIELKQGFKSKIEDVREEIL 215
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.1E-182771IPR005540KNOX1
PfamPF037902.2E-162970IPR005540KNOX1
SMARTSM012564.3E-2083138IPR005541KNOX2
PfamPF037913.3E-1588137IPR005541KNOX2
PROSITE profilePS512139.045194214IPR005539ELK domain
PROSITE profilePS5007111.661214277IPR001356Homeobox domain
SMARTSM003894.5E-11216281IPR001356Homeobox domain
SuperFamilySSF466891.58E-16216281IPR009057Homeodomain-like
CDDcd000861.15E-11217278No hitNo description
Gene3DG3DSA:1.10.10.601.7E-25221279IPR009057Homeodomain-like
PfamPF059201.1E-17234273IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDNCYNGGFG VDFSTAGSGG GDHHQQQQLK AEIAAHPLYE QVLSAHVACL RVATPIDQLS  60
LIDAQLSQSH NLLRSYAQNA THNSLTQHQR QELDDFLAQY MVVLCSFREQ LHSHVRVHAV  120
EAVIACREIE HNFQSLTGVT LEEGNGATMS DDEEELQMDF SLDQSLANDN DLMGFGPLLP  180
TESERSLMER VRQELKIELK QGFKSKIEDV REEILRKRRA GKLPGDTTSV LKDWWQQHSK  240
WPYPTEDDKA KLVEQTGLQL KQINNWFINQ RKRNWHSQSQ SATSLKSKRK R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A5e-13217273864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270290RKRNWHSQSQSATSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtPossible developmental regulator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.A00907.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding; up to 7-fold increase.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835489.10.0PREDICTED: homeobox protein HD1-like
SwissprotP466061e-153HD1_BRANA; Homeobox protein HD1
TrEMBLA0A022RG890.0A0A022RG89_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-153KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Boivin R,Hamel F,Beauseigle D,Bellemare G
    Stage-specific transcription of the homebox gene Bnhd1 in young tissues and flowers of Brassica napus.
    Biochim. Biophys. Acta, 1994. 1219(1): p. 201-4
    [PMID:7916213]