PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.A01129.1.p
Common NameMIMGU_mgv1a021885mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 215aa    MW: 24255.2 Da    PI: 8.2032
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.A01129.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.6e-172168148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT++Ed +l+++++++G+ +Wk  a + g++R++k+c++rw++yl
  Migut.A01129.1.p 21 KGSWTADEDRKLAQCIEMHGPTRWKFLALKSGLNRCGKSCRLRWLNYL 68
                      799*******************************************97 PP
2Myb_DNA-binding46.58.2e-1574118147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ +  E++l+++++++lG++ W++Ia +++ gRt++++k++w+ +
  Migut.A01129.1.p  74 RGNISDAEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNAH 118
                       788899****************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7411668IPR017930Myb domain
SuperFamilySSF466895.87E-2819115IPR009057Homeodomain-like
SMARTSM007172.1E-142070IPR001005SANT/Myb domain
PfamPF002497.5E-162168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-212275IPR009057Homeodomain-like
CDDcd001673.28E-92368No hitNo description
PROSITE profilePS5129425.03769123IPR017930Myb domain
SMARTSM007177.8E-1573121IPR001005SANT/Myb domain
PfamPF002492.5E-1374119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2476122IPR009057Homeodomain-like
CDDcd001674.99E-978119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MYVCMAKRLS SSSSAAAALN KGSWTADEDR KLAQCIEMHG PTRWKFLALK SGLNRCGKSC  60
RLRWLNYLRP DIKRGNISDA EEDLILRLHR LLGNRWSLIA GRLPGRTDNE IKNYWNAHLR  120
KKAKLMEKLP APSSTATILQ DNNNEDREKT VGSSCSTGAV EIIKETQESK DRDEYWSSDD  180
DDDGGGDVER FDSSRKGTKG LNWVKTFLEL EEES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-291912325128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.A01129.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827317.11e-156PREDICTED: transcription factor MYB114-like
SwissprotQ388502e-48MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A022PYJ51e-151A0A022PYJ5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.19e-50myb domain protein 66
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]