PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00176.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family DBB
Protein Properties Length: 212aa    MW: 23648.4 Da    PI: 5.9786
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00176.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.3e-07433534
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                       C+ +e+  ++lfC  ++  lC+ C ++ H
  Migut.B00176.1.p  4 LCDVCESAAAILFCAADEAALCRACDDKVH 33
                      7*************************9998 PP
2zf-B_box25.42.8e-085291237
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                      e  +C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Migut.B00176.1.p 52 ELLRCDICESAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                      6789**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.1E-7147IPR000315B-box-type zinc finger
PROSITE profilePS501199.926147IPR000315B-box-type zinc finger
CDDcd000216.33E-6333No hitNo description
PfamPF006435.7E-6342IPR000315B-box-type zinc finger
PROSITE profilePS501199.035196IPR000315B-box-type zinc finger
SMARTSM003362.4E-95196IPR000315B-box-type zinc finger
PfamPF006431.1E-55285IPR000315B-box-type zinc finger
CDDcd000211.42E-65584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRACDD KVHMCNKLAN RHVRVGLAEP SELLRCDICE  60
SAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLMLRQR VEFPGDKPGN VDEPGSQRNN  120
IGEAKMETSH MSNHRAIENQ QNHGASPNRN LGNDTEYDGR MENNLIDLNA RPQRMHGHAP  180
NNQERVDTFG DNNHGFESVV PDGYYKRELE K*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00176.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837117.11e-157PREDICTED: B-box zinc finger protein 19-like
SwissprotC0SVM53e-78BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A022RG311e-132A0A022RG31_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-80DBB family protein