PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00229.1.p
Common NameMIMGU_mgv1a024317mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 85aa    MW: 9531.68 Da    PI: 10.5452
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00229.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-101459345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                       WT++E +l+ +a +++  +   +W  +ar +g g++++++k ++q
  Migut.B00229.1.p 14 TWTAQENKLFEKALARFDRDtpdRWQNVARAVGGGKSAEEVKTHYQ 59
                      7*****************99*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-4862IPR009057Homeodomain-like
PROSITE profilePS512939.9681066IPR017884SANT domain
SMARTSM007171.4E-81164IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-121369IPR009057Homeodomain-like
PfamPF002493.3E-81459IPR001005SANT/Myb domain
CDDcd001673.75E-61459No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MASSSMSTRR AGSTWTAQEN KLFEKALARF DRDTPDRWQN VARAVGGGKS AEEVKTHYQI  60
LIEDLRRIET GHVPIPNYRN ASVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-30779374RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00229.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836815.12e-57PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1736e-30RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A022RDI22e-54A0A022RDI2_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-32RAD-like 6