PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00294.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 220aa    MW: 25071.6 Da    PI: 9.6566
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00294.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.61.5e-1516106199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffk+++p++ ++   l++p +f e+ + +  +s + tl +++   Wev+l  +  +g +++ +GW eFvk + L   D++vFk++g+s+f   
  Migut.B00294.1.p  16 FFKIMLPPNFTR---LRIPHDFNEQLSDI--NSNQATLASRTCGNWEVELV-KDDKGDIYFIRGWPEFVKHHSLVPLDILVFKYNGDSSF--D 100
                       788887777664...67******999666..45679**************5.44444566777***********************9999..8 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v +f+k
  Migut.B00294.1.p 101 VVIFDK 106
                       988887 PP
2B354.32.4e-17126219199
                       EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                       f+k++ +s+ ++++++ +pkkfa++h  +   +++ +tl++++g s +  +i+ ++  +   +t+GWkeF + n +k gD+++F+l++  +++
  Migut.B00294.1.p 126 FEKKMQSSNIGSKSLVQIPKKFATAHlPH---SKQRITLRNSDGVSSSASIIIfSR--KYLAITGGWKEFSDFNSIKKGDICTFELID--QTT 211
                       89***99*******************533...3457********999999954233..34789**********************997..777 PP

                       .EEEEE-S CS
                B3  92 lvvkvfrk 99 
                       + v++frk
  Migut.B00294.1.p 212 MQVHIFRK 219
                       89***996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-2011108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-2011108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.60513107IPR003340B3 DNA binding domain
CDDcd100171.39E-1414105No hitNo description
PfamPF023622.7E-1316106IPR003340B3 DNA binding domain
SMARTSM010192.1E-1316107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-23118218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-22120218IPR015300DNA-binding pseudobarrel domain
CDDcd100172.55E-17124218No hitNo description
PROSITE profilePS5086313.296126219IPR003340B3 DNA binding domain
PfamPF023621.1E-15126219IPR003340B3 DNA binding domain
SMARTSM010191.8E-11126219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MLGKNEIGSP DRRPCFFKIM LPPNFTRLRI PHDFNEQLSD INSNQATLAS RTCGNWEVEL  60
VKDDKGDIYF IRGWPEFVKH HSLVPLDILV FKYNGDSSFD VVIFDKNGTV RNYHHHQESA  120
SSFPSFEKKM QSSNIGSKSL VQIPKKFATA HLPHSKQRIT LRNSDGVSSS ASIIIFSRKY  180
LAITGGWKEF SDFNSIKKGD ICTFELIDQT TMQVHIFRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00294.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836988.11e-163PREDICTED: B3 domain-containing protein Os11g0197600-like
TrEMBLA0A022RFQ01e-122A0A022RFQ0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.18e-15B3 family protein