PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.B00334.1.p

Common Name

LOC105957567, MIMGU_mgv1a014607mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

Protein Properties

Length: 187aa MW: 21199.1 Da PI: 8.9573

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.B00334.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.8	1.7e-17	88	177	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++s+v+ +l lp +f+++h k ++ ++ l de+g+++ k+ k++ l++GW++F+ +++L +gD +vF+l++r++f + Migut.B00334.1.p 88 FVKPMLQSHVTGGFWLGLPVHFCNKHLPK--SDEMMDLVDEEGEVFPTKYLALKRG----LSGGWRGFAIDHELVDGDALVFQLTDRTTF--K 172 89*******************999433..5569***********666665....9********************9988888..8 PP EEEE- CS B3 94 vkvfr 98 v ++r Migut.B00334.1.p 173 VYIIR 177 88877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.53E-24	82	179	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.6E-20	82	178	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.49E-26	86	177	No hit	No description
Pfam	PF02362	5.6E-16	88	177	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.928	88	179	IPR003340	B3 DNA binding domain
SMART	SM01019	5.5E-21	88	179	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MKKVKPRVPK QPLDLSAVRR SNRVADLPPR TYKENLSVVP MGRARSYSSG RRRDLSNRVY 60 ASDEDRAYAI ERAEELESRL DKDNMPVFVK PMLQSHVTGG FWLGLPVHFC NKHLPKSDEM 120 MDLVDEEGEV FPTKYLALKR GLSGGWRGFA IDHELVDGDA LVFQLTDRTT FKVYIIRVND 180 SGESSD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.B00334.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012836952.1	1e-136	PREDICTED: B3 domain-containing protein At3g19184 isoform X1
Swissprot	Q69V36	8e-66	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A022RCB4	1e-122	A0A022RCB4_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-67	B3 family protein

Link Out ? help Back to Top
Phytozome	Migut.B00334.1.p
Entrez Gene	105957567

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]