PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.B00390.1.p

Common Name

LOC105957522, MIMGU_mgv1a026376mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

MYB

Protein Properties

Length: 293aa MW: 32435.2 Da PI: 7.5441

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.B00390.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.6	4e-20	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell+++v+++G ++W++I r ++ gR++k+c++rw + Migut.B00390.1.p 12 KGPWSAEEDELLKKLVERHGARNWSLICRSIP-GRSGKSCRLRWCNQ 57 79****************************.*********985 PP
2	Myb_DNA-binding	52.3	1.3e-16	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a+ ++G++ W++I+r + gRt++ +k++w++ Migut.B00390.1.p 66 PFTAEEDETILKAHSEFGNK-WASISRLLV-GRTDNAIKNHWNST 108 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.187	7	62	IPR017930	Myb domain
SuperFamily	SSF46689	2.02E-31	9	105	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-17	11	60	IPR001005	SANT/Myb domain
Pfam	PF00249	7.4E-19	12	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-26	13	65	IPR009057	Homeodomain-like
CDD	cd00167	1.87E-15	14	56	No hit	No description
SMART	SM00717	1.5E-14	63	111	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.528	63	113	IPR017930	Myb domain
CDD	cd00167	1.19E-10	66	109	No hit	No description
Pfam	PF00249	3.1E-14	66	108	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.7E-23	66	112	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MAAEKEVSDR IKGPWSAEED ELLKKLVERH GARNWSLICR SIPGRSGKSC RLRWCNQLSP 60 EVQHRPFTAE EDETILKAHS EFGNKWASIS RLLVGRTDNA IKNHWNSTLK RKFAADAAAC 120 GGGGEEERRT QVLRRSGCRD ISAAMRHGLN LISHESNSDS ESSDSDNKAN LYFPVTRSEL 180 AAPQRKPPPT VVDVESINDT DLTALTLGLP GTRSDSSEKS IGVRESRRSQ GSGESSRFPI 240 TAEEEENKPP SLAPELLVVM QELIRKEVRN YLSEHGEINP GIKRSGISRI ID*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-38	7	113	2	108	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.B00390.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012836902.1	0.0	PREDICTED: transcription factor MYB44-like
TrEMBL	A0A022RBC1	0.0	A0A022RBC1_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16860	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	7e-63	myb domain protein 73

Link Out ? help Back to Top
Phytozome	Migut.B00390.1.p
Entrez Gene	105957522