PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.B00434.1.p

Common Name

MIMGU_mgv1a013924mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 213aa MW: 23191 Da PI: 8.0119

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.B00434.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.4	1.2e-29	8	107	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++p+++r+ +++sl++eA+ r+ +Pv+Gavg++++++++l+ Migut.B00434.1.p 8 SCNGCRILRKGCNENCILRQSLqgiesPQAQANATVFVAKFFGRAGLMSFLSSVPQSQRTSLFQSLLFEACGRTVNPVNGAVGLMSTGNWHLC 100 6****************************************************************************************** PP DUF260 89 qlkaela 95 q+++e++ Migut.B00434.1.p 101 QSAVETV 107 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.625	7	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.6E-26	8	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MLERISMSCN GCRILRKGCN ENCILRQSLQ GIESPQAQAN ATVFVAKFFG RAGLMSFLSS 60 VPQSQRTSLF QSLLFEACGR TVNPVNGAVG LMSTGNWHLC QSAVETVLDG GVPRCLPEYS 120 PQSSPELDEG FEDHNNGLCM NSRDSNIRVN NNNGGLTAAR MTSRGRRENS RSASPPSDES 180 ETTTLESGFI FHQRHQNHHG NGNGTKLLRL FI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.B00434.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012836780.1	1e-156	PREDICTED: LOB domain-containing protein 38-like
Swissprot	Q9SN23	3e-57	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A022RFA8	1e-150	A0A022RFA8_ERYGU; Uncharacterized protein
STRING	Migut.B00434.1.p	1e-155	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-59	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Migut.B00434.1.p