PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.B00434.2.p

Common Name

MIMGU_mgv1a013924mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 204aa MW: 22141.7 Da PI: 8.2288

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.B00434.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	63.1	7.2e-20	8	98	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++p+++r+ ++ r+ +Pv+Gavg++++++++l+q+ Migut.B00434.2.p 8 SCNGCRILRKGCNENCILRQSLqgiesPQAQANATVFVAKFFGRAGLMSFLSSVPQSQRT---------SCGRTVNPVNGAVGLMSTGNWHLCQS 93 6********************************************************6.........799********************* PP DUF260 91 kaela 95 ++e++ Migut.B00434.2.p 94 AVETV 98 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.589	7	104	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-16	8	97	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MLERISMSCN GCRILRKGCN ENCILRQSLQ GIESPQAQAN ATVFVAKFFG RAGLMSFLSS 60 VPQSQRTSCG RTVNPVNGAV GLMSTGNWHL CQSAVETVLD GGVPRCLPEY SPQSSPELDE 120 GFEDHNNGLC MNSRDSNIRV NNNNGGLTAA RMTSRGRREN SRSASPPSDE SETTTLESGF 180 IFHQRHQNHH GNGNGTKLLR LFI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.B00434.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012836780.1	1e-146	PREDICTED: LOB domain-containing protein 38-like
Swissprot	Q9SN23	2e-48	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A022RFA8	1e-140	A0A022RFA8_ERYGU; Uncharacterized protein
STRING	Migut.B00434.1.p	1e-145	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-50	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Migut.B00434.2.p