PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00436.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 297aa    MW: 30331.8 Da    PI: 8.0687
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00436.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00061152174123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ykC+ C+k F +   L  H  +H
  Migut.B00436.1.p 152 YKCSVCDKAFASYQALGGHKASH 174
                       9**********999998888877 PP
2zf-C2H213.30.00025214236123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C+ksF++   L  H r+H
  Migut.B00436.1.p 214 HECTICHKSFTSGQALGGHKRKH 236
                       78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.57E-9151174No hitNo description
SMARTSM003550.012152174IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-4152174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.884152179IPR007087Zinc finger, C2H2
PfamPF139121.0E-12152176IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
SuperFamilySSF576672.57E-9209236No hitNo description
PROSITE profilePS501579.827214236IPR007087Zinc finger, C2H2
SMARTSM003550.054214236IPR015880Zinc finger, C2H2-like
PfamPF139127.9E-12214238IPR007087Zinc finger, C2H2
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MALEAVNSAP AGAAPPLSKT RRFESWKKSG ARSSKRQRMI QPEDEYLAVC LVMLARSGAA  60
PYQSPPAACH STGDTKQADG NTSPAQIITA AAATSEINKY DGNNPVSPIT TTTAAAASNS  120
TGETTHKGNP VVVPEIAIPA AAAAASPAAN SYKCSVCDKA FASYQALGGH KASHRAKPPT  180
AAAISSDDRS PYTAIPAAAA SNPTSALNPS GRLHECTICH KSFTSGQALG GHKRKHYEGV  240
IGSGAAKSRT TSSNGGATSD QMTAAAVIRD FDLNVAPPPE LMCDEEAESA LPPLFE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00436.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836724.10.0PREDICTED: zinc finger protein AZF1-like
TrEMBLA0A022RC170.0A0A022RC17_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1500529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.29e-33zinc-finger protein 2