PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.B00437.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

C2H2

Protein Properties

Length: 311aa MW: 32426.6 Da PI: 10.1452

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.B00437.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	202	224	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+ksF + L H r+H Migut.B00437.1.p 202 HECDVCHKSFDSGQALGGHKRRH 224 78*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.87E-9	145	169	No hit	No description
PROSITE profile	PS50157	11.718	147	174	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.33	147	169	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	7.1E-11	147	170	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	149	169	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.87E-9	197	224	No hit	No description
SMART	SM00355	0.14	202	224	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.556	202	224	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.0E-12	202	226	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	204	224	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MAVDRSLNSA APLKKPRRFD SVDQPRGGGG GGVVVVGKWK KLSRRSGRTR RRLPPEGNER 60 FAAFLLRLAR SGCGPPPAAA ANHSTGEAEP SGNKPAAAGP STGKSGNNPV SPVITTTTSA 120 AAPADHSDVK ISKESVPTTP PAAARSFGCS ECGKGFSSYQ ALGGHKTSHR LKLPIAAAID 180 GDDDRTPYAA VIPAAKPSGK LHECDVCHKS FDSGQALGGH KRRHYEGVIG GGSTKNRKTS 240 SNGGATSSNQ MPAAPAAVIW DFDLNLPPPD DLEVEIYPII LLQYQLLLLL KFIESNSGAS 300 CRSLSVWFTN *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	18	LKKPRRF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.B00437.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012836723.1	0.0	PREDICTED: zinc finger protein AZF2-like
TrEMBL	A0A022RCZ8	1e-179	A0A022RCZ8_ERYGU; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15005	2	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19580.2	3e-26	zinc-finger protein 2

Link Out ? help Back to Top
Phytozome	Migut.B00437.1.p