PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00482.1.p
Common NameLOC105957333, MIMGU_mgv1a022990mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 242aa    MW: 25525.9 Da    PI: 5.8895
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00482.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.78.2e-202673148
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                      k+ie+ s rqvtfskRr g++KKA+EL++L +a+va+i+ s   +++ 
  Migut.B00482.1.p 26 KKIESLSSRQVTFSKRRVGLFKKASELCILSGAQVAIIVHSLGKRVFA 73
                      68*************************************997766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.6E-281877IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.3941878IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-231989IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-172040IPR002100Transcription factor, MADS-box
PfamPF003193.1E-192774IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-174055IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-175576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVIMKNNGQT TVVKKTSQGR RKIEIKKIES LSSRQVTFSK RRVGLFKKAS ELCILSGAQV  60
AIIVHSLGKR VFAFGHPTPD SVIDRFLSGG AVENCPAAAA AAWAGDYNRD YADVCKELEA  120
EKKRKEFIEA SKRAEECYGG GGGGFWWDEA VEGMGLEELE QYAAALDMLM KNVALKADDM  180
MISAAAAAAA AAGGGNAARS DGGDGYLMNE MAAAFVNQSQ GIGGSDSGGC VFPYGFGQDQ  240
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00482.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836714.11e-177PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A022RBY51e-175A0A022RBY5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-35AGAMOUS-like 62