PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.B00638.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

C3H

Protein Properties

Length: 208aa MW: 22459.3 Da PI: 10.3225

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.B00638.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.4	8.7e-12	140	163	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++Crf+ +G+C++G+ C+FaHg+ Migut.B00638.1.p 140 KPCRFWETGGICQFGSDCQFAHGK 163 69********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	4.58E-9	135	168	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.549	136	164	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.0E-6	138	163	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-12	140	169	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.8E-9	141	163	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MENQRDFKAP KFKPFDGALS PLNALNFSGR RYNTMFDPYA SDSSNSPSPL MKYLRCADPS 60 AAAAASRTPF ISPVKVEEDV IVMDGIPVPK SSKGSGDARM RSPLTPSNSV NCSFTGYRSP 120 SPGSGVRATG IENIKYHRNK PCRFWETGGI CQFGSDCQFA HGKEELRSPR SSGKIKIEIS 180 KSNSSSSVGS NSSSYGKKRS PISKVKAA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.B00638.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012828281.1	1e-149	PREDICTED: uncharacterized protein LOC105949527
TrEMBL	A0A022PRY2	1e-114	A0A022PRY2_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7765	18	24

Link Out ? help Back to Top
Phytozome	Migut.B00638.1.p