PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00716.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ZF-HD
Protein Properties Length: 218aa    MW: 24204.1 Da    PI: 8.765
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00716.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.17.9e-32357358
       ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                      +vrY+eClkNhAas+Gg+a DGCgEfmp+ ge+gt +al+C+AC CHRnFHR+e +
  Migut.B00716.1.p  3 QVRYRECLKNHAASIGGTANDGCGEFMPA-GEDGTLEALTCSACSCHRNFHRKEID 57
                      79**************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.5E-29356IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-21457IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.7E-30556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.469655IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.89E-18128197IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-30130198IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-27139195IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVQVRYRECL KNHAASIGGT ANDGCGEFMP AGEDGTLEAL TCSACSCHRN FHRKEIDHGD  60
DHPPPPPCNN CYNNPSRPKL FLQGGGGGHY HHSGVPPPPR HQMIMSYNIG GSMRSDQSDE  120
QDGGGGGGAA GRRPEMMMKK RFRTKFSQEQ KEKMLGFAER VGWRIQKQEE SVVQSFCHEI  180
GVKRRVLKVW MHNNKHTHLA ASTNKNNNNT NHDQTQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-241401971875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00716.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840257.11e-164PREDICTED: zinc-finger homeodomain protein 3
SwissprotO647221e-66ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A022R8381e-140A0A022R838_ERYGU; Uncharacterized protein
STRINGMigut.B00716.1.p1e-164(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-61homeobox protein 31
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]