PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00804.1.p
Common NameLOC105970179, MIMGU_mgv1a007778mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 396aa    MW: 45351.3 Da    PI: 6.7896
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00804.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.0005479101323
                       ET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                       C+   Cgk+F +   L++H   H
  Migut.B00804.1.p  79 CSyeGCGKTFIDAGALRKHSHIH 101
                       77779**************7766 PP
2zf-C2H214.97.6e-05106130123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       y C+  +Cgk F ++s LkrH   H
  Migut.B00804.1.p 106 YICHyeNCGKKFLDSSKLKRHFLIH 130
                       89*******************8877 PP
3zf-C2H221.65.7e-07136160123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp   Cgk Fs   nL++H++tH
  Migut.B00804.1.p 136 FVCPheGCGKAFSLDFNLRSHMKTH 160
                       89**********************9 PP
4zf-C2H215.74.4e-05166190123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp   Cgk++ + + Lk+Hi++H
  Migut.B00804.1.p 166 HVCPysECGKRYAHEYKLKNHISSH 190
                       79**********************6 PP
5zf-C2H211.80.00073231256123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       y Cp   C k + + + L+ H+r+ H
  Migut.B00804.1.p 231 YGCPyeGCEKAYIHEYKLNLHLRReH 256
                       679999*****************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-1372103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003277101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78377106IPR007087Zinc finger, C2H2
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF576675.43E-880130No hitNo description
Gene3DG3DSA:3.30.160.608.5E-14104126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.013106130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.066106135IPR007087Zinc finger, C2H2
PROSITE patternPS000280108130IPR007087Zinc finger, C2H2
SuperFamilySSF576673.26E-14117170No hitNo description
Gene3DG3DSA:3.30.160.603.9E-20127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.1E-4136160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.695136165IPR007087Zinc finger, C2H2
PROSITE patternPS000280138160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-8161192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.05166190IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.619166195IPR007087Zinc finger, C2H2
PROSITE patternPS000280168191IPR007087Zinc finger, C2H2
SuperFamilySSF576671.93E-5168190No hitNo description
Gene3DG3DSA:3.30.160.601.8E-8225254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.93E-5226253No hitNo description
SMARTSM003550.051231256IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471231261IPR007087Zinc finger, C2H2
PROSITE patternPS000280233256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
METHFNHNLF DRRPITKSRA PAVKWVKEWV PQEVIATGAK CFVLKWVNEA TLKAVKEKTK  60
EPQMVEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYICHY ENCGKKFLDS  120
SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH SQENYHVCPY SECGKRYAHE  180
YKLKNHISSH HEKSMMDAAA PKYTPPAPEK PVKTPKSSTG PSGPASSERP YGCPYEGCEK  240
AYIHEYKLNL HLRREHPGHF PDENAKNTQI NNNVNISNNN NNNNNENEMM DEGSDLDAYA  300
GKRRAQKQSR PKPNLKMPPS KVVPHRKNNS SAPTANLSVV KKPWPVKEEV YEDEDSEETE  360
EERDNNINNN NNTGDGWRYG ENNNEDDDEE TEYED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C4e-35791908117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00804.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012850433.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L31e-147YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A022QG140.0A0A022QG14_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-134C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]