PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00859.1.p
Common NameLOC105978148, MIMGU_mgv1a015650mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 152aa    MW: 16680.7 Da    PI: 9.2586
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00859.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.29.1e-116384526
                      --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       C++f rtG C+yGd+Ck++H+
  Migut.B00859.1.p 63 VCNRFVRTGSCQYGDSCKYHHP 84
                      6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.7E-14447No hitNo description
PfamPF062205.7E-9538IPR013085Zinc finger, U1-C type
PROSITE profilePS5010313.2355886IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-76088IPR000571Zinc finger, CCCH-type
SMARTSM003560.00196085IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-86384IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-66384IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MPLGKYVCDY CDKQFQDTPG ARRRHLQGVA HQRAKALWYD SFRSSTQPGL NQVQDPLSIG  60
KGVCNRFVRT GSCQYGDSCK YHHPNKNLPN MTSSQGTEGT SFVNNIQSQR EASLPAVLSG  120
NRTGASLRNL PPSLWPPPEG GYPAIPFIDW G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00859.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012859021.11e-111PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1
SwissprotQ0JP112e-42C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A022PSS01e-106A0A022PSS0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120081821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-43C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]