PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.B00859.3.p

Common Name

LOC105978148, MIMGU_mgv1a015650mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

C3H

Protein Properties

Length: 151aa MW: 16682.7 Da PI: 9.5168

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.B00859.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.2	9e-11	62	83	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f rtG C+yGd+Ck++H+ Migut.B00859.3.p 62 VCNRFVRTGSCQYGDSCKYHHP 83 6********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.24E-14	4	50	No hit	No description
Pfam	PF06220	5.6E-9	5	38	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	13.235	57	85	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0019	59	84	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.88E-7	59	87	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-6	62	83	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-8	62	83	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MPLGKYVCDY CDKQFQDTPG ARRRHLQGVA HQRAKALWYD SFRSSTQRLN QVQDPLSIGK 60 GVCNRFVRTG SCQYGDSCKY HHPNKNLPNM TSSQGTEGTS FVNNIQSQRE ASLPAVLSGN 120 RTGASLRNLP PSLWPPPEGG YPAIPFIDWG *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.B00859.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012859022.1	1e-110	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2
Swissprot	Q0JP11	2e-42	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A022PSS0	1e-109	A0A022PSS0_ERYGU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	1e-43	C3H family protein

Link Out ? help Back to Top
Phytozome	Migut.B00859.3.p
Entrez Gene	105978148

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]