PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.B00923.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YB

Protein Properties

Length: 211aa MW: 23080.1 Da PI: 4.175

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.B00923.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	110.3	1.1e-34	49	141	3	96
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 + +++Pi n++ri++++lP +aki++da e++qec+sefi+ vtsea++k++ + r i+ +d++ a+++lG++dyvepl+v+l+kyr ++ Migut.B00923.1.p 49 DAYQYMPIVNIVRILRRALP-HAKIADDANEIIQECISEFIAIVTSEANEKARSQYRTIITLEDVIAAIGSLGLDDYVEPLTVFLNKYRAADP 140 66789*************.69****************************************************************9876 PP NF-YB 96 e 96 e Migut.B00923.1.p 141 E 141 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.8E-31	51	143	IPR009072	Histone-fold
Pfam	PF00808	3.8E-14	53	116	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	5.12E-26	53	142	IPR009072	Histone-fold
PRINTS	PR00615	2.1E-10	80	98	No hit	No description
PRINTS	PR00615	2.1E-10	99	117	No hit	No description
PRINTS	PR00615	2.1E-10	118	136	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MLLNIYIYNS FISGTINQEA ADRAGAAANL PTTNAGDQNL ASPQSWRRDA YQYMPIVNIV 60 RILRRALPHA KIADDANEII QECISEFIAI VTSEANEKAR SQYRTIITLE DVIAAIGSLG 120 LDDYVEPLTV FLNKYRAADP ERGTSMQVQL AMAMCSTGQQ PSTTPVAQLV PPPPPTPSVI 180 TGDGPMIVDD NEEVDPDEYI GFTEVIRKYF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	3e-32	48	136	7	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.B00923.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012857928.1	1e-144	PREDICTED: nuclear transcription factor Y subunit B-9-like
TrEMBL	A0A022RJH1	9e-69	A0A022RJH1_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.B00923.1.p	1e-153	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	1e-37	NF-YB family protein

Link Out ? help Back to Top
Phytozome	Migut.B00923.1.p