PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.B00953.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YB

Protein Properties

Length: 219aa MW: 23890.8 Da PI: 4.3645

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.B00953.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	134.3	3.7e-42	52	144	2	94
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 re+d ++P++n++r+++++lP +akis+dake++qe vsefis vtsea++k++re rkti ++d++ a+++lGf+dyvepl+vyl+kyr + Migut.B00953.1.p 52 RETDLYMPMTNIVRVLRRALPPHAKISDDAKEIIQERVSEFISIVTSEANEKAHREYRKTIHPEDVIAAMSSLGFDDYVEPLTVYLNKYRAED 144 799***************************************************************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.9E-40	49	147	IPR009072	Histone-fold
SuperFamily	SSF47113	1.93E-31	55	147	IPR009072	Histone-fold
Pfam	PF00808	6.1E-19	58	121	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.1E-15	85	103	No hit	No description
PRINTS	PR00615	2.1E-15	104	122	No hit	No description
PRINTS	PR00615	2.1E-15	123	141	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MEIGGNSNTQ HKDTTRASAS ASGTIDPNSV APNLPTSNVG DQNQAPPQDF RRETDLYMPM 60 TNIVRVLRRA LPPHAKISDD AKEIIQERVS EFISIVTSEA NEKAHREYRK TIHPEDVIAA 120 MSSLGFDDYV EPLTVYLNKY RAEDPERGAS MQIQLPMAIP SGAQQPPAAV VAPPVPPPPP 180 APLVVMGDGM VIVDDDEVVG PDEYIGFDEV IRKYFLND*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	6e-40	52	141	7	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.B00953.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012858186.1	1e-158	PREDICTED: nuclear transcription factor Y subunit B-9-like
TrEMBL	A0A022RVS1	1e-113	A0A022RVS1_ERYGU; Uncharacterized protein
STRING	Migut.B00953.1.p	1e-157	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	2e-43	NF-YB family protein

Link Out ? help Back to Top
Phytozome	Migut.B00953.1.p