PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B01315.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 342aa    MW: 37516.9 Da    PI: 7.9323
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B01315.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.81e-06156175120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C++C+k+F+r  nL+ H+
  Migut.B01315.1.p 156 FSCHICSKTFNRYNNLQMHM 175
                       89*****************9 PP
2zf-C2H215.35.6e-05240262123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +Cgk+F  k + ++H +++
  Migut.B01315.1.p 240 FACRKCGKPFAVKGDWRTHEKNC 262
                       78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.15E-6149178No hitNo description
Gene3DG3DSA:3.30.160.601.5E-4156175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.18156178IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637156183IPR007087Zinc finger, C2H2
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SuperFamilySSF576676.52E-6225268No hitNo description
Gene3DG3DSA:3.30.160.603.2E-5226260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035578240260IPR015880Zinc finger, C2H2-like
SMARTSM00355160266289IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MREEPHHHCS NLSPTGFFNF IPLTNLHNYP SPSSPSSSSS PSTTTNPTIK EALPLLNTLN  60
YSCNNIINNN NNNNEYCTFK CEKSHTDAAV ALQIGLPEVS PSSTSGNLVI DSSMGVEKGE  120
SGVEIVLSGM PLNRLSNMGQ YWIPSPTQIL IGPTQFSCHI CSKTFNRYNN LQMHMWGHGS  180
QYRKGPESLR GTQPTAMLRL PCYCCAPSCK HNIDHPRAKP LKDFRTLQTH YKRKHGAKPF  240
ACRKCGKPFA VKGDWRTHEK NCGKIWYCVC GSDFKHKRSL KDHIKAFGHG HGANCSNNFE  300
LHSDRFEEDD EEEEYTSEID QHGGGGGGGG GGGGGGGESP M*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B01315.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849660.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ9SVY11e-108ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A022QIK50.0A0A022QIK5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-108C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]