PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B01362.1.p
Common NameLOC105969528, MIMGU_mgv1a010945mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 297aa    MW: 31294.1 Da    PI: 9.3073
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B01362.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.31.9e-063760225
                      -S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                      k ++C  f+ t  C++Gd C+F H
  Migut.B01362.1.p 37 KSKPCTKFFSTSGCSFGDACHFLH 60
                      7789******************** PP
2zf-CCCH20.11.2e-061091221427
                       --TTTTT-SS-SSS CS
           zf-CCCH  14 tCkyGdrCkFaHgp 27 
                        C+yGd+C+FaH++
  Migut.B01362.1.p 109 GCRYGDSCRFAHSE 122
                       6***********95 PP
3zf-CCCH253.2e-08267291126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       yk + C  f + G C +GdrC+FaH+
  Migut.B01362.1.p 267 YKKKMCEKFPK-GLCTFGDRCNFAHS 291
                       8999*******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.2113563IPR000571Zinc finger, CCCH-type
SMARTSM003560.673562IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-63664IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-63760IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-43760IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-1293125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-795126IPR000571Zinc finger, CCCH-type
SMARTSM003560.01995122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.66295123IPR000571Zinc finger, CCCH-type
PfamPF146080.16110120No hitNo description
SuperFamilySSF547914.68E-15152231IPR004088K Homology domain, type 1
SMARTSM003225.5E-12159229IPR004087K Homology domain
PROSITE profilePS5008414.55160224IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.4E-15160228IPR004088K Homology domain, type 1
PfamPF000139.2E-10162225IPR004088K Homology domain, type 1
CDDcd001052.31E-14162224No hitNo description
Gene3DG3DSA:4.10.1000.102.1E-12264296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-8264296IPR000571Zinc finger, CCCH-type
SMARTSM003560.017266292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.122267293IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-5267291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDFGRKRGRP DAAFSGNGGS KKYKEETDSF TSGVGSKSKP CTKFFSTSGC SFGDACHFLH  60
YFPGYNAHSQ LANMGGNTAA PAGRNGAFTD NPSPSMKTRI CNKINTAEGC RYGDSCRFAH  120
SEMELGSKPP PMHGYEDHRM MGPPSGFPQR LEPVANFGAS ATAKISVDAT FAGPIIGKNG  180
VNSKQICRQT GVKLSIKDHE TDPNQRNIEL EGTFDQIKEA SSMVRQLIMN ISAAGGRGEK  240
PPMGSFGGHG GGGGGGGGGG GGPPSHYKKK MCEKFPKGLC TFGDRCNFAH STSELR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B01362.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849750.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-93C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A022QHP90.0A0A022QHP9_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-70C3H family protein