PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B01362.2.p
Common NameLOC105969528, MIMGU_mgv1a010945mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 224aa    MW: 23402.4 Da    PI: 9.1215
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B01362.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49.3e-0736491427
                      --TTTTT-SS-SSS CS
           zf-CCCH 14 tCkyGdrCkFaHgp 27
                       C+yGd+C+FaH++
  Migut.B01362.2.p 36 GCRYGDSCRFAHSE 49
                      6***********95 PP
2zf-CCCH25.62.2e-08194218126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       yk + C  f + G C +GdrC+FaH+
  Migut.B01362.2.p 194 YKKKMCEKFPK-GLCTFGDRCNFAHS 218
                       8999*******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-122052IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.6622250IPR000571Zinc finger, CCCH-type
SMARTSM003560.0192249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-72253IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.48E-1579158IPR004088K Homology domain, type 1
SMARTSM003225.5E-1286156IPR004087K Homology domain
PROSITE profilePS5008414.5587151IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.108.2E-1687155IPR004088K Homology domain, type 1
PfamPF000135.5E-1089152IPR004088K Homology domain, type 1
CDDcd001051.70E-1489151No hitNo description
Gene3DG3DSA:4.10.1000.101.4E-12191223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-8191223IPR000571Zinc finger, CCCH-type
SMARTSM003560.017193219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.122194220IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5194218IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGGNTAAPAG RNGAFTDNPS PSMKTRICNK INTAEGCRYG DSCRFAHSEM ELGSKPPPMH  60
GYEDHRMMGP PSGFPQRLEP VANFGASATA KISVDATFAG PIIGKNGVNS KQICRQTGVK  120
LSIKDHETDP NQRNIELEGT FDQIKEASSM VRQLIMNISA AGGRGEKPPM GSFGGHGGGG  180
GGGGGGGGGP PSHYKKKMCE KFPKGLCTFG DRCNFAHSTS ELR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B01362.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849750.11e-162PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ69XQ31e-63C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A022QHP91e-161A0A022QHP9_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-52C3H family protein