PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B01641.1.p
Common NameLOC105964024, MIMGU_mgv1a024257mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 210aa    MW: 22638.8 Da    PI: 6.1039
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B01641.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.18.2e-40201201100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+++Cv+apyf +eq +++fa+vh++FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+vg+i++lqqq+ +l+a
  Migut.B01641.1.p  20 PCGACKFLRRKCVRGCVFAPYFDSEQgTAHFAAVHRVFGASNASKLLLRIPPHRRLDAVITLCYEALARVRDPVYGCVGHIFTLQQQIVNLQA 112
                       7***********************9989***************************************************************** PP

            DUF260  93 elallkee 100
                       ela+++++
  Migut.B01641.1.p 113 ELAYTQAR 120
                       ***99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.71619121IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3820118IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSNCGGGDGG ESGGGGGGGP CGACKFLRRK CVRGCVFAPY FDSEQGTAHF AAVHRVFGAS  60
NASKLLLRIP PHRRLDAVIT LCYEALARVR DPVYGCVGHI FTLQQQIVNL QAELAYTQAR  120
ISTFRRGPCL PPVPQPIAPS RPSSEFACEM AVFDADETSV EMTSFCNNNN IVVDEEEVVV  180
LEDGELQSLA MEYVSRYFPG VRFRPPTSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-39161147104LOB family transfactor Ramosa2.1
5ly0_B6e-39161147104LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B01641.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843975.11e-153PREDICTED: LOB domain-containing protein 19
SwissprotO221324e-65LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A022QVV51e-152A0A022QVV5_ERYGU; Uncharacterized protein
STRINGMigut.B01641.1.p1e-152(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.12e-64LOB domain-containing protein 19