PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B01667.1.p
Common NameLOC105964031, MIMGU_mgv1a012364mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 28888.8 Da    PI: 8.0457
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B01667.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.53.1e-32959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye++s
  Migut.B01667.1.p  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFAS 59
                      79***********************************************86 PP
2K-box101.51.1e-3379167896
             K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                        ++e++++s++qe++kLk+++e+Lqr+qRhllGedL++Ls+keLq+Le+qLe +l + R++K++l++eq+e+l++ke++l + nk+L+ 
  Migut.B01667.1.p  79 TNAERETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSIKELQNLEKQLELALVQARQRKTQLMMEQMEDLRRKERQLGDMNKQLKI 167
                       368899********************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.16161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-42160IPR002100Transcription factor, MADS-box
CDDcd002658.61E-47273No hitNo description
SuperFamilySSF554551.57E-34290IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-33323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-333859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-3080169IPR002487Transcription factor, K-box
PROSITE profilePS5129716.88185179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048437Biological Processfloral organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFAST  60
STAETLERYQ RCSFNPQETN AERETQSWYQ EVSKLKAKYE SLQRTQRHLL GEDLGPLSIK  120
ELQNLEKQLE LALVQARQRK TQLMMEQMED LRRKERQLGD MNKQLKIRVS LEMSTLEAEG  180
QGMRGLPCPW NSGESAAGGG GFHLQLPPSQ QVDTIEPQPV LQMGYHDYDI GEGSSAPRSM  240
DLDNNFFQAW TL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-228717019102Developmental protein SEPALLATA 3
4ox0_B1e-228717019102Developmental protein SEPALLATA 3
4ox0_C1e-228717019102Developmental protein SEPALLATA 3
4ox0_D1e-228717019102Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B01667.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843982.10.0PREDICTED: MADS-box transcription factor 6
SwissprotQ8LLR11e-124MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A022QWR80.0A0A022QWR8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.15e-88AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]